Retrieve the Results of an Advanced Search

Source: R/bd_retrieve_by_search.R

BacDive.DSMZ.de/AdvSearch returns a list of results, which you can retrieve in bulk via the URL of the results page. Please see the vignette "Pre-Configuring Advanced Searches and Retrieving the Results".

bd_retrieve_by_search(queryURL)

Arguments

queryURL

Mandatory character string. URL the search results page.

Value

A (large) list containing either a single BacDive dataset in case your parameter / search was unambiguous, or if ambiguous: all matching datasets. Read BacDive.DSMZ.de/api/bacdive to learn more.

Examples

  plant_animal_pathogens <-
    bd_retrieve_by_search(
      queryURL = paste(
        "https://bacdive.dsmz.de/advsearch?site=advsearchsearch",
        "params%5B5%5D%5Bsearchterm%5D=1",
        "searchparams%5B157%5D%5Bsearchterm%5D=1",
        "searchparams%5B158%5D%5Bsearchterm%5D=1",
        "advsearch=search", sep = "&")
        )
#> Warning: No datasets found. Please check your advanced search and copy-paste the URL again.