R/bd_retrieve.R
, R/bd_retrieve_by_culture.R
, R/bd_retrieve_by_sequence.R
, and 2 more
bd_retrieve.Rd
Retrieve (a) Dataset(s) from BacDive
bd_retrieve(id) bd_retrieve_by_culture(collection_no) bd_retrieve_by_sequence(accession) bd_retrieve_taxon(name)
id | Mandatory character string or integer. The BacDive strain ID whose data you want to retrieve. |
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collection_no | Mandatory character string. A culture collection number by which the associated dataset(s) will be retrieved. |
accession | Mandatory character string. A sequence accession number by which the associated dataset(s) will be retrieved. |
name | Mandatory character string, specifying the taxon. Abbreviations like "B. halotolerans" are not allowed! |
A (large) list containing either a single BacDive dataset in case your parameter / search was unambiguous, or if ambiguous: all matching datasets. Read BacDive.DSMZ.de/api/bacdive to learn more.
dataset_717 <- bd_retrieve(id = 717)#>dataset_717 <- bd_retrieve(id = "717")#>dataset_DSM_319 <- bd_retrieve_by_culture(collection_no = "DSM 319")#>#>dataset_AJ000733 <- bd_retrieve_by_sequence(accession = "AJ000733")#>#>datasets_Bh <- bd_retrieve_taxon(name = "Bacillus halotolerans")#>#>#>#>#>#>#>#>#>datasets_Thh <- bd_retrieve_taxon(name = "Tetragenococcus halophilus halophilus")#>#>#>#>#>